Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0813536.6a.5b with 8 members (target of EGR1)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata /

... /

Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria / Laurasiatheria /

Artiodactyla /

Completeness score: 1.00

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This HOG has 33 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0813536.6a	584	169	target of EGR1
2	HOG:E0813536	257	242	target of EGR1
3	HOG:E0813536.6a.5b.3b.1b	168	21	target of EGR1
4	HOG:E0813536.6a.5b	136	67	target of EGR1
5	HOG:E0813536.6a.4a	128	17	target of EGR1
6	HOG:E0813536.6a.5b.2b	104	13	target of EGR1
7	HOG:E0813536.4b	98	13	target of EGR1
8	HOG:E0813536.3a	65	15	target of EGR1
9	HOG:E0343679	51	15	C3H1-type domain-containing protein
10	HOG:E0813536.6a.5b.3b	24	25	target of EGR1
11	HOG:E0813536.6a.2b	16	2	target of EGR1
12	HOG:E0813536.6a.2a	16	2	target of EGR1
13	HOG:E0813536.6a.1b	16	2	target of EGR1
14	HOG:E0813536.6a.1a	16	2	target of EGR1
15	HOG:E0813536.4c	9	2	target of EGR1
16	HOG:E0813536.6b	8	1	target of EGR1
17	HOG:E0813536.6a.5b.3b.1a	8	1	target of EGR1
18	HOG:E0813536.6a.5b.1b	8	1	target of EGR1
19	HOG:E0813536.6a.5b.1a	8	1	target of EGR1
20	HOG:E0813536.6a.3b	8	1	target of EGR1
21	HOG:E0813536.6a.3a	8	1	target of EGR1
22	HOG:E0813536.5b	8	1	target of EGR1
23	HOG:E0813536.5a	8	1	target of EGR1
24	HOG:E0813536.4a	8	1	target of EGR1
25	HOG:E0813536.3b	8	1	target of EGR1

Showing 1 to 25 of 33 rows rows per page